|Ahead of print
|Prevalence and genotype distribution of Enterobius vermicularis among kindergarteners in Shiraz and Khorramabad cities, Iran
Atefeh Tavan1, Fattaneh Mikaeili1, Seyed Mahmoud Sadjjadi1, Sara Bajelan1, Hossein Mahmoudvand2, Meysam Sharifdini3
1 Department of Parasitology and Mycology, School of Medicine, Shiraz University of Medical Sciences, Shiraz, Iran
2 Department of Laboratory Sciences, School of Allied Medicine, Lorestan University of Medical Sciences, Khorramabad, Iran
3 Department of Medical Parasitology and Mycology, School of Medicine, Guilan University of Medical Sciences, Rasht, Iran
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|Date of Submission||18-Mar-2020|
|Date of Decision||20-Feb-2020|
|Date of Acceptance||27-Feb-2020|
|Date of Web Publication||27-Mar-2020|
Objective: To study the prevalence and genotype of Enterobius (E.) vermicularis from adhesive tape samples in the cities of Shiraz and Khorramabad, Iran.
Methods: A total of 1 000 adhesive tape samples from kindergartens in Shiraz (500 samples) and Khorramabad (500 samples) were collected and tested using a microscope to find E. vermicularis egg/s. A questionnaire was filled out for each sample. In order to characterize the genotype of E. vermicularis, the PCR-sequencing method of the mitochondrial cytochrome C oxidase subunit 1 (cox1) gene was used. Genomic DNA was extracted from the positive scotch tape samples of E. vermicularis. The cox1 gene was amplified by the polymerase chain reaction and sequenced. The sequence data were aligned using the BioEdit software and compared with the published sequences in GenBank. Phylogenetic analysis was performed using the maximum likelihood method.
Results: The parasitological method showed that 15 out of the 500 samples from Shiraz (3.00%) and 12 out of the 500 samples from Khorramabad (2.40%) were infected with E. vermicularis eggs. BLAST analysis indicated that the sequenced isolates belonged to E. vermicularis genotype B while three different haplotypes were also identified.
Conclusions: This is the first study on genotyping E. vermicularis in the cities of Shiraz and Khorramabad. Considering the public health importance of the disease, further studies are necessary to characterize the genotype of E. vermicularis in human populations from other regions of Iran.
Keywords: Enterobius vermicularis; Genotype; Cytochrome C oxidase subunit 1 gene; Shiraz; Khorramabad; Iran
|How to cite this URL:|
Tavan A, Mikaeili F, Sadjjadi SM, Bajelan S, Mahmoudvand H, Sharifdini M. Prevalence and genotype distribution of Enterobius vermicularis among kindergarteners in Shiraz and Khorramabad cities, Iran. Asian Pac J Trop Med [Epub ahead of print] [cited 2020 May 30]. Available from: http://www.apjtm.org/preprintarticle.asp?id=280229
| 1. Introduction|| |
Enterobius (E.) vermicularis (pinworm) is the most common intestinal nematode in children that causes enterobiasis or oxyuriasis. This parasite is a direct-transmitted helminth such that its mode of transmission is direct interpersonal contact. Enterobiasis is often asymptomatic in most adults and children, and the most important symptom of the disease is perianal pruritus,. Although E. vermicularis resides in the lumen of large intestine, it can occasionally be detected in ectopic sites such as the appendix, kidney, uterus, urinary tract and female genital tract, eye/s and subcutaneous nodule,,,,,,,,. The best diagnostic method of enterobiasis is scotch tape test or graham method. E. vermicularis is a cosmopolitan distributed nematode and children are the most commonly infected host. Epidemiological studies have indicated that the prevalence of E. vermicularis in human has been estimated from 0.3% to 66.14% in different parts of Iran,,,,,,,.
Molecular studies have revealed the genotypes A, B and C in E. vermicularis from humans and chimpanzees,,,,. Despite the relatively high prevalence of enterobiasis in the world, molecular studies for the genotype characterization of E. vermicularis are limited. The study conducted by Nakano et al. for the genotype characterization of E. vermicularis isolated from humans and chimpanzees showed that the type A belonged to human samples while the types A, B and C were detected in chimpanzee samples. However, Piperaki et al, Ferrero et al. and Kubiak et al. reported only the type B in human samples,,. In a study of Rahnamaye Hayati Hagh et al. on genotype characterization of E. vermicularis in Iran, type B of E. vermicularis in humans was the predominant genotype of this nematode in the northwest of Iran. Considering lack of information regarding the genotypes of E. vermicularis in the cities of Shiraz and Khorramabad, the present study was aimed to characterize the genotypes of this nematode from adhesive tape samples in these regions using the PCR-sequencing method.
| 2. Material and methods|| |
2.1. Study areas
Shiraz (29°37’N 52°32’E), one of the oldest cities of Iran, is located in the south of the country, in a green plain at the foot of the Zagros Mountains, 1 500 meters above sea level. Shiraz is the fifth-most- populous city of Iran and the capital of Fars Province (Old Persian as Pars). It has a moderate climate, and is overall classed as a hot semiarid climate. Around 300 mm (12 inch) of rain falls each year in the city, almost entirely in the winter months [Figure 1].
|Figure 1: Geographic location of studies areas in Iran (Fars and Lorestan Provinces).|
Click here to view
Khorramabad (33°29’16’‘N 48°21’21’‘E) is the capital of Lorestan Province, western part of Iran, and is located in the Zagros Mountains. It has an extremely hot summer with very low humidity, but its winter is sufficiently wet [Figure 1].
2.2. Sample collection
A cross-sectional study was conducted from April to December 2017. The sample size is calculated using the following formula:
n= Z1-α/2 p (1-p)/d2. Where Z1-α/2=1.96 at type I error of 5%,
where P=prevalence based on previous studies, d=absolute error or precision.
According to meta-analysis study, approximately 17% of kindergarten and primary school children are infected with E. vermicularis in Iran. The sample size was calculated with the absolute error or precision of 0.05 and at type I error of 5% (1.96). Therefore, based on the formula n= 1.96 2 0.17 (1-0.17)/0.052. This gave a sample size of 217. To reduce errors, the sample size increased to 500. A total of 1 500 samples from 500 kindergarten children in Shiraz as well as 1 500 samples from 500 kindergarten children in Khorramabad were collected and examined using scotch tape test. The procedure of sample collection was explained to the parents. In brief, the samples should be collected in the early morning before washing the perianal area. The adhesive side of the transparent scotch tape was placed firmly on the skin of the perianal area several times and fixed on the labeled microscope slide. The samples were transferred to the laboratory for microscopic examination. The parents of children were given consent forms. The consent form had two parts, one part was information sheet describing the research and the role of the participants, and another part was certificate of consent attesting to the participant’s consent. A structured questionnaire was filled out for each sample. In order to improve the chances of detection of E. vermicularis eggs, three adhesive tape samples were taken from each child on three separate days. The design of the study, including ethical aspects, was reviewed and approved by the ethics committee at the Shiraz University of Medical Sciences (code: IR.SUMS.REC.1396.S176).
2.3. Microscopy method
All the samples were tested by microscopic examination to find E. vermicularis eggs. The slides contained E. vermicularis eggs were stored at 4°C for DNA extraction.
2.4. Molecular methods
2.4.1. DNA extraction and PCR-sequencing
The genomic DNA from positive scotch tape samples of E. vermicularis was extracted using Tissue Genomic DNA Extraction Mini kit, with Proteinase (Yekta Tajhiz Azma kit, Cat. No. FATGK001) according to the manufacturer’s instructions with a minor modification. A piece of tape containing E. vermicularis eggs was excised from each slide, immersed in 200 μL TG1 buffer and 20 μL of proteinase K, and finally incubated at 56°C for 1 h and at 60°C overnight.
The mitochondrial cytochrome C oxidase subunit 1 (cox1) gene was subjected to analysis using the PCR reaction. The forward (EVM1: 5 -TTTTTGGTCATCCTGAGGTTTATATTC-3) and reverse primers (EVM2: 5-CCACATTATCCAAAATAGGATTAGCC-3) were used for amplification of the cox1 gene. The PCR reactions were performed in a final volume of 25 μΚ Each reaction contained 12.5 μL of the PCR master mix (2x Master Mix RED (Ampliqon, Denmark), (1.25 U Taq DNA polymerase, 200 μM of dNTPs and 1.5 mM of MgCl2), 0.5 μL of each primer (12.5 pmoL), 5 μL of template DNA and 6.5 μL of double-distilled water. The temperature profile was one cycle of 94°C for 5 minutes to denature the double stranded DNA, followed by 35 cycles of 94°C for 1 minute (denaturation), 57°C for 1 minute (annealing), 72°C for 45 seconds (extension), and a final extension of 72°C for 10 minutes. Double-distilled water (DDW) instead of template DNA was included in each set of the PCR reaction as negative control and DNA extracted from adult worm of E. vermicularis as positive control. The PCR products were separated by electrophoresis on a 1.5% agarose gel and stained with Gel Red (GelRed™ Nucleic Acid Gel Stain, 10 000 × in Water, cat. No. 41003); afterwards, the bands were visualized using a UV transilluminator followed by digital photography.
2.4.2. Sequencing and genotype characterization
The PCR products were sequenced in two directions using the same forward and reverse primers used in the PCR. The sequence results were edited by the Geneious software (www.geneious.com) and the consensus sequences were compared with the GenBank reference sequences using BLAST system (http://www.ncbi.nlm. nih.gov/) for genotype characterization. A phylogenetic tree was constructed with sequences obtained in the present study along with the reference sequences deposited in GenBank and reference sequences of Syphacia obvelata as the outgroup using the maximum likelihood method in the MEGA 5.0 software. Bootstrap analyses (using 1 000 replicates) were carried out to determine the robustness of the finding. The sequences reported in this paper were deposited in GenBank.
2.5. Statistical analysis
Statistical analysis was done using statistical package for the social sciences(SPSS) software (version 21.0). The Chi-squared test was performed to evaluate the associations between E. vermicularis infection and variables such as gender and age. A value less than 0.05 was considered statistically significant.
| 3. Results|| |
3.1. Prevalence results
Among the 500 kindergarteners in Shiraz, 262 (52.4%) were males and 238 (47.6%) were females with the mean age of (4.92±0.87) years old. 500 kindergarteners in Khorramabad consisted of 245 males (49.00%) and 255 females (51.00%) and the mean age was (5.12±0.78) years old. A total of 15 (3.00%) out of 500 scotch tape samples from Shiraz and 12 (2.40%) out of 500 scotch tape samples from Khorramabad were positive to E. vermicularis egg/s by microscopy. This result was obtained from three successive samplings from each person, so that positive cases were observed in one, two or three times, successively or alternatively [Table 1].
|Table 1: Demographic characterizations, results of 3 successive sampling from each positive case observed in the first, second or third times and the accession numbers of isolates in Shiraz and Khorramabad.|
Click here to view
The kindergarteners infected with E. vermicularis eggs consisted of 16 males (16/27, 59.26%) and 11 females (11/27, 40.74%) with the mean age of (5.2±0.75) years old. The infection rate of the kindergarteners with E. vermicularis eggs in Shiraz and Kharramabad for males and females was 3.1% (16/507) and 2.2% (11/493), respectively. Although higher levels of infection rate with E. vermicularis were reported among boys than in girls, there was no statistically significant association between gender and infection rate (P=0.367). Based on the statistical analysis, the difference between the age of the kindergarteners and infection rate with E. vermicularis was not significant (P=0.197).
3.2. Genotyping results
The positive scotch tape samples of E. vermicularis were examined by the PCR method using the mitochondrial cox1 gene. An approximately 390 bp band was amplified from 27 isolates and the positive control after the PCR, and no amplification was observed in the negative controls.
Sequence analysis was performed for 17 PCR products to characterize the genotype of E. vermicularis. BLAST analysis indicated that sequenced isolates belonged to the E. vermicularis genotype B. The consensus sequences determined in this study were deposited in GenBank with accession numbers MH802591 to MH802611. The demographic data and accession numbers of the isolates are given in Table 1. The consensus phylogenetic tree indicated that 17 isolates of E. vermicularis obtained in the current study based on the cox1 sequences were divided into three haplotypes and intra-species variation was (0.0%-1.2%). In this study, the cox1 sequence of one isolate (0107) had a 100% homology with E. vermicularis isolated from humans in Iran (Accession no. KJ780777) and Greece (Accession no. HQ317440) [Figure 2].
|Figure 2: Phylogenetic relationship of cox1 sequences of Enterobius vermicularis isolates obtained in this study and reference sequences retrieved from GenBank, Syphacia obvelata (AN: GQ260135) was used as the outgroup.|
Click here to view
| 4. Discussion|| |
The results of the present study indicated a prevalence of 2.7% of E. vermicularis infection among kindergarteners in Shiraz and Khorramabad, Iran. Rostami et al. reported that the prevalence of E. vermicularis was 1.2% in 800 students in the city of Gorgan, Iran, which was lower than the rate in our study. This may be due to the type of the diagnostic method. We used the scotch tape test while they used the direct smear and formalin-ether concentration for diagnosis of E. vermicularis. Studies conducted in northern Iran including mild and humid climates reported a higher prevalence rate than that in our study; the weather factors such as humidity and temperature could affect the prevalence of E. vermicularis[l7,22]. Similar to our study, the prevalence of E. vermicularis in kindergartens in Karaj was shown to be 2.3%.
Molecular studies on E. vermicularis previously conducted in Iran showed the type B in humans. However, the types A, B and C of E. vermicularis were reported in humans and chimpanzees,,,,. The genotype B of E. vermicularis was observed in our study, which is similar to the studies performed in Greece, Germany, Denmark and Iran, reporting the genotype B in humans,,,. In contrast to our study, Nakano et al. reported the genotypes B and A of E. vermicularis in chimpanzees and human samples, respectively. They hypothesized that the genotype B of E. vermicularis was probably transmitted to chimpanzees from humans and therefore, the type B probably existed in human populations. The genotypes A and B were isolated from both humans and chimpanzees, but the genotype C was reported only in chimpanzees. However, there has been no study to report the genotype C of E. vermicularis in humans.
In the present study, the isolates of E. vermicularis obtained based on the cox1 sequences were divided into three haplotypes. A previous study carried out in Iran showed that E. vermicularis had two subtypes including B1 and B2 in the northwest of Iran by the cox1 gene sequencing method. In our study, the cox1 sequence of one haplotype (the isolates 0e26, 0e98, 0e313, 0e338, 0eB23, 0e105, 0eF100, 0eF101, 0eF102, 0eF104, 0eF105, 0eF109, and 0eF110) was identical with E. vermicularis isolated from humans in Greece (Accession no. HQ317435). The isolate 0107 had a 100% homology with E. vermicularis isolated from humans in Iran (Accession no. KJ780777) and Greece (Accession no. HQ317440). The isolates 0eK19, 0eA23 and 0eK45A were identified as the new haplotypes. The genotype B is the only type of E. vermicularis which has been reported in Iran. Similar to our study, the intra-species variation was 0-1.2%, the genetic variability was reported among the type B sequences of E. vermicularis from 1.2% to 2.1% by Piperaki et al..
In conclusion, E. vermicularis is still a common intestinal nematode in children. Due to the high prevalence of this parasite in Iran, the prevention and control programs in human populations are necessary. The genotype characterization is important for the planning of prevention and control programs in human and animal communities. As previously reported in other studies, the genotype B of E. vermicularis in humans was identified in our study and considered as the only predominant genotype of this nematode in Shiraz and Khorramabad, Iran. For characterization of the genotype of E. vermicularis including its haplotypes, comprehensive molecular studies with a large number of E. vermicularis isolates from different parts of Iran are necessary.
Conflict of interest statement
We declare that we have no conflict of interest.
This study was supported by the office of the Vice Chancellor for Research at SUMS grant number: 95-01-01-13420 .
FM and SMS designed the study; AT, HM and MS collected the samples; AT, SB, FM and SMS carried out the microscopy method; AT and FM carried out molecular method; FM and AT analyzed and interpreted the data. FM and SMS drafted the manuscript; all the authors read and approved the final version of the manuscript.
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Source of Support: None, Conflict of Interest: None
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